STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSBP4Single stranded DNA binding protein 4. (256 aa)    
Predicted Functional Partners:
NEU3
Neuraminidase 3.
    
 
 0.743
LDB1
LIM domain binding 1.
   
 
 0.680
LDB2
LIM domain binding 2.
   
 
 0.680
CPA1
Carboxypeptidase A1.
      
 0.673
LOC102350907
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
  
 0.669
KXD1
Ubiquitin-like domain-containing protein.
   
  
 0.669
LHX4
LIM homeobox 4.
    
 
 0.490
LHX3
LIM homeobox 3.
    
 
 0.490
RNF11
Ring finger protein 11a.
   
    0.463
LMO4
LIM domain only 4b.
    
 
 0.444
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.