STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102349393IF rod domain-containing protein; Belongs to the intermediate filament family. (514 aa)    
Predicted Functional Partners:
UBE2V2-2
Ubiquitin-conjugating enzyme E2 variant 2.
   
 0.798
UBE2V1
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.798
BAG3
BCL2 associated athanogene 3.
    
 0.578
LOC102354642
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
0.546
LOC102347292
Zgc:92380; Belongs to the intermediate filament family.
  
0.527
KRT18
Keratin 18b; Belongs to the intermediate filament family.
  
0.527
H3AMI6_LATCH
Uncharacterized protein; Belongs to the intermediate filament family.
   
0.507
LOC102348321
IF rod domain-containing protein; Belongs to the intermediate filament family.
   
0.507
H3B3U5_LATCH
Type I cytokeratin, enveloping layer; Belongs to the intermediate filament family.
   
0.507
LOC102350396
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
0.491
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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