STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HINFPHistone H4 transcription factor. (508 aa)    
Predicted Functional Partners:
GSC
Goosecoid homeobox.
    
   0.848
ZNF318
C2H2-type domain-containing protein.
      
 0.601
VANGL2
Vang-like protein.
      
 0.590
NPAT
Nuclear protein, coactivator of histone transcription.
    
 
 0.576
LSM10
LSM10, U7 small nuclear RNA associated.
      
 0.554
TAF8
TATA-box binding protein associated factor 8.
   
    0.550
LRRC57
Leucine rich repeat containing 57.
   
    0.547
HMX3
H6 family homeobox 3.
    
   0.516
H3ASY4_LATCH
H6 family homeobox 4.
    
   0.516
HNF4G
Hepatocyte nuclear factor 4 gamma.
    
 
 0.506
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.