STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX6Sorting nexin; Involved in several stages of intracellular trafficking. (423 aa)    
Predicted Functional Partners:
SNX1
PX domain-containing protein.
   
 0.854
SNX2
Sorting nexin 2.
   
0.850
SNX4
Sorting nexin 4.
   
 0.732
SNX8
Sorting nexin 8.
   
 0.715
SNX7
Sorting nexin 7.
   
0.696
SNX30
Sorting nexin family member 30.
   
 0.693
CMAS
Cytidine monophosphate N-acetylneuraminic acid synthetase.
   
 0.693
IFT27
Intraflagellar transport 27.
      
 0.683
SNAPIN
SNAP associated protein.
   
 
 0.630
SNX18
Sorting nexin.
     
 0.610
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.