STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3BHF5_LATCHUncharacterized protein. (848 aa)    
Predicted Functional Partners:
TGFB1
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.722
TGFB3
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.610
TGFB2
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.537
LOC102352268
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.537
ITGB6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.506
ARID4A
AT-rich interaction domain 4A.
    
 0.471
ITGB8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.469
WDR90
WD repeat domain 90.
   
  0.454
RBPJL
Recombination signal binding protein for immunoglobulin kappa J region like.
    
 0.415
RBPJ
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.415
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.