STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM39RNA binding motif protein 39. (531 aa)    
Predicted Functional Partners:
SON
Uncharacterized protein.
   
  0.913
RBM25
RNA binding motif protein 25.
   
0.880
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
0.874
CDC5L
Cell division cycle 5 like.
   
 
 0.868
DDX5
DEAD-box helicase 5; Belongs to the DEAD box helicase family.
   
 0.841
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
 0.812
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.775
PRPF40A
Pre-mRNA processing factor 40 homolog A.
   
  0.772
LOC102360619
Uncharacterized protein.
   
 0.732
DDA1
DET1 and DDB1 associated 1.
    
 
 0.731
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.