STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX2LIM homeobox 2. (418 aa)    
Predicted Functional Partners:
LDB1
LIM domain binding 1.
    
 0.697
LDB2
LIM domain binding 2.
    
 0.697
FEZF1
FEZ family zinc finger 1.
  
 
 0.545
EBF2
EBF transcription factor 2.
   
 
 0.476
SIX6
SIX homeobox 6.
   
  
 0.464
VSX2
Visual system homeobox 2.
      
0.461
SLC39A7
Solute carrier family 39 member 7.
      
 0.418
CITED1
Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1.
      
 0.414
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.