STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM50Tripartite motif containing 50. (478 aa)    
Predicted Functional Partners:
WDR53
WD repeat domain 53.
      
 0.655
BUD23
BUD23 rRNA methyltransferase and ribosome maturation factor.
    
 
 0.633
BCL7B
BAF chromatin remodeling complex subunit BCL7B.
      
 0.603
GTF2IRD1
GTF2I repeat domain containing 1.
      
 0.579
WDR7
WD repeat domain 7.
      
 0.570
ANXA6
Annexin.
     
 0.567
DYSF
Dysferlin.
     
 0.548
H3B4I2_LATCH
Uncharacterized protein.
     
 0.548
MYOF
Myoferlin.
     
 0.548
UVRAG
UV radiation resistance associated.
    
 
 0.539
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.