STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C18orf63Chromosome 18 open reading frame 63. (817 aa)    
Predicted Functional Partners:
KPTN
Kaptin, actin binding protein.
    
 0.686
DEPDC5
DEP domain containing 5.
   
 0.662
WDR59
WD repeat domain 59.
    
 0.651
WDR24
WD repeat domain 24.
    
 0.650
NPRL2
NPR2 like, GATOR1 complex subunit.
    
 0.631
SZT2
Uncharacterized protein.
    
 0.575
H3A2L0_LATCH
Uncharacterized protein.
    
 0.575
NPRL3
NPR3 like, GATOR1 complex subunit.
     
 0.520
MIOS
Meiosis regulator for oocyte development.
     
 0.482
ATP6V1H
V-type proton ATPase subunit H; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
   
  0.475
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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