STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTUD7BOTU deubiquitinase 7B. (872 aa)    
Predicted Functional Partners:
UBXN7
UBX domain-containing protein 7.
   
   0.789
RPS27A
Ribosomal protein S27a.
   
  0.735
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.636
LOC102350907
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.627
KXD1
Ubiquitin-like domain-containing protein.
    
  0.627
LTA
Lymphotoxin alpha.
   
 0.601
TNIP3
TNFAIP3 interacting protein 3.
    
 0.554
TNIP1
TNFAIP3 interacting protein 1.
    
 0.554
RIPK1
Receptor interacting serine/threonine kinase 1.
   
 0.518
APC
APC regulator of WNT signaling pathway.
    
  0.496
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.