STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd1Ankyrin repeat domain 1a (cardiac muscle). (315 aa)    
Predicted Functional Partners:
ppm1a
Protein phosphatase, Mg2+/Mn2+ dependent, 1Aa.
    
 
 0.608
W5NA12_LEPOC
Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta.
  
 
 
0.601
W5NBH3_LEPOC
Ankyrin repeat and SOCS box-containing 12a.
  
 
  0.597
tead1
TEA domain family member 1b.
    
 
 0.594
asb1
Ankyrin repeat and SOCS box containing 1.
  
 
  0.588
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.577
relb
V-rel avian reticuloendotheliosis viral oncogene homolog B.
   
 0.576
W5NGW5_LEPOC
V-rel avian reticuloendotheliosis viral oncogene homolog.
   
 0.576
ift81
Intraflagellar transport 81 homolog.
    
 0.568
chuk
Component of inhibitor of nuclear factor kappa B kinase complex.
    
 0.561
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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