STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC39Coiled-coil domain containing 39. (954 aa)    
Predicted Functional Partners:
IFT122
Intraflagellar transport 122.
   
 
 0.755
ccdc65
Coiled-coil domain containing 65.
   
 
 0.690
fam227a
Uncharacterized protein.
   
    0.688
W5N901_LEPOC
Coiled-coil domain containing 40.
    
 
 0.683
W5NA59_LEPOC
Radial spoke head component 4A.
   
 
 0.679
dnali1
Dynein, axonemal, light intermediate chain 1.
    
 
 0.669
armc4
Armadillo repeat containing 4.
   
 
 0.661
W5N4S6_LEPOC
Leucine rich repeat containing 6.
   
 
 0.633
W5MZJ7_LEPOC
Uncharacterized protein.
    
 
 0.618
rsph9
Radial spoke head 9 homolog.
    
 
 0.595
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.