STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102697917Yip1 interacting factor homolog A (S. cerevisiae). (265 aa)    
Predicted Functional Partners:
rabac1
PRA1 family protein.
   
 
 0.779
yipf4
Protein YIPF.
   
 
 0.777
yipf5
Protein YIPF.
   
 
 0.731
YIPF7
Protein YIPF.
   
 
 0.731
W5N9P2_LEPOC
Selenoprotein S.
   
 
 0.723
SELENOS
Selenoprotein S.
   
 
 0.723
maea
Macrophage erythroblast attacher.
   
 
 0.681
unc50
Unc-50 homolog (C. elegans).
      
 0.557
W5MUY6_LEPOC
Syntaxin 6; Belongs to the syntaxin family.
   
 
 0.482
W5M0R4_LEPOC
Uncharacterized protein.
   
 
 0.466
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.