efhc1 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

efhc1

EF-hand domain (C-terminal) containing 1. (571 aa)

Predicted Functional Partners:

rsph9

0.997

cfap52

0.996

efhb

0.989

W5M1L2_LEPOC

0.984

ribc2

0.971

cfap161

0.970

rsph3

0.969

ak7

0.967

tekt2

0.966

LOC107078618

0.966

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107078618	W5M1L2_LEPOC	ENSLOCP00000007647	ENSLOCP00000002270	Uncharacterized protein.	EF-hand domain (C-terminal) containing 2.	0.972
LOC107078618	ak7	ENSLOCP00000007647	ENSLOCP00000010480	Uncharacterized protein.	Adenylate kinase 7b.	0.908
LOC107078618	cfap161	ENSLOCP00000007647	ENSLOCP00000015791	Uncharacterized protein.	Cilia and flagella associated protein 161.	0.885
LOC107078618	cfap52	ENSLOCP00000007647	ENSLOCP00000016374	Uncharacterized protein.	Cilia and flagella associated protein 52.	0.914
LOC107078618	efhb	ENSLOCP00000007647	ENSLOCP00000007928	Uncharacterized protein.	EF-hand domain family, member B.	0.950
LOC107078618	efhc1	ENSLOCP00000007647	ENSLOCP00000001002	Uncharacterized protein.	EF-hand domain (C-terminal) containing 1.	0.966
LOC107078618	ribc2	ENSLOCP00000007647	ENSLOCP00000020475	Uncharacterized protein.	RIB43A domain with coiled-coils 2.	0.946
LOC107078618	rsph3	ENSLOCP00000007647	ENSLOCP00000020212	Uncharacterized protein.	Radial spoke head 3.	0.902
LOC107078618	rsph9	ENSLOCP00000007647	ENSLOCP00000019720	Uncharacterized protein.	Radial spoke head 9 homolog.	0.813
W5M1L2_LEPOC	LOC107078618	ENSLOCP00000002270	ENSLOCP00000007647	EF-hand domain (C-terminal) containing 2.	Uncharacterized protein.	0.972
W5M1L2_LEPOC	ak7	ENSLOCP00000002270	ENSLOCP00000010480	EF-hand domain (C-terminal) containing 2.	Adenylate kinase 7b.	0.874
W5M1L2_LEPOC	cfap161	ENSLOCP00000002270	ENSLOCP00000015791	EF-hand domain (C-terminal) containing 2.	Cilia and flagella associated protein 161.	0.964
W5M1L2_LEPOC	cfap52	ENSLOCP00000002270	ENSLOCP00000016374	EF-hand domain (C-terminal) containing 2.	Cilia and flagella associated protein 52.	0.989
W5M1L2_LEPOC	efhb	ENSLOCP00000002270	ENSLOCP00000007928	EF-hand domain (C-terminal) containing 2.	EF-hand domain family, member B.	0.993
W5M1L2_LEPOC	efhc1	ENSLOCP00000002270	ENSLOCP00000001002	EF-hand domain (C-terminal) containing 2.	EF-hand domain (C-terminal) containing 1.	0.984
W5M1L2_LEPOC	ribc2	ENSLOCP00000002270	ENSLOCP00000020475	EF-hand domain (C-terminal) containing 2.	RIB43A domain with coiled-coils 2.	0.956
W5M1L2_LEPOC	rsph3	ENSLOCP00000002270	ENSLOCP00000020212	EF-hand domain (C-terminal) containing 2.	Radial spoke head 3.	0.912
W5M1L2_LEPOC	rsph9	ENSLOCP00000002270	ENSLOCP00000019720	EF-hand domain (C-terminal) containing 2.	Radial spoke head 9 homolog.	0.916
W5M1L2_LEPOC	tekt2	ENSLOCP00000002270	ENSLOCP00000000511	EF-hand domain (C-terminal) containing 2.	Tektin 2 (testicular).	0.972
ak7	LOC107078618	ENSLOCP00000010480	ENSLOCP00000007647	Adenylate kinase 7b.	Uncharacterized protein.	0.908