Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC102693466EH-domain containing 1b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (556 aa)    
Predicted Functional Partners:
rbsn
Rabenosyn, RAB effector.
    
 0.993
W5MTZ6_LEPOC
RAB11 family interacting protein 2 (class I).
    
 0.939
W5NCQ2_LEPOC
Uncharacterized protein.
    
 0.928
W5MSJ7_LEPOC
Uncharacterized protein.
     
 0.922
W5M2S9_LEPOC
Synaptosome associated protein 29.
    
 
 0.847
W5M3V4_LEPOC
Ankyrin repeat and FYVE domain containing 1.
    
 
 0.670
vps45
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
     
 0.620
pdcd6ip
Programmed cell death 6 interacting protein.
    
 
 0.562
arid5b
AT-rich interaction domain 5B.
    
 
 0.552
LOC102696857
RAB5B, member RAS oncogene family.
     
 0.535
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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