STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5LY27_LEPOCMab-21 domain-containing protein. (286 aa)    
Predicted Functional Partners:
LOC107076494
Mab-21 domain-containing protein.
 
    
0.859
W5NKM8_LEPOC
Interferon regulatory factor 3.
      
 0.618
tbk1
TANK-binding kinase 1.
      
 0.598
W5N4B5_LEPOC
Transmembrane protein 173.
    
 0.574
thrsp
Thyroid hormone responsive.
    
  0.545
LOC107076971
CARD_2 domain-containing protein.
      
 0.525
DDX41
DEAD-box helicase 41.
      
 0.491
W5NAP2_LEPOC
SUMO1 activating enzyme subunit 1.
      
 0.486
irf7
Interferon regulatory factor 7.
      
 0.485
irf2
Interferon regulatory factor 2.
      
 0.458
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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