Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM50Tripartite motif containing 50. (482 aa)    
Predicted Functional Partners:
ube2h
Ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.823
W5LZ04_LEPOC
Dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive).
     
 0.669
myof
Myoferlin like.
     
 0.669
wdr53
WD repeat domain 53.
      
 0.664
rps27a
Ribosomal protein S27a.
    
  0.652
anxa6
Annexin.
    
 0.651
trim23
Tripartite motif containing 23.
    
 0.584
W5M2F8_LEPOC
GTF2I repeat domain containing 1.
      
 0.583
W5NLK8_LEPOC
Insulin receptor substrate 1.
    
 0.575
irs4
Insulin receptor substrate 4a.
    
 0.575
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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