Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rfx2Regulatory factor X, 2 (influences HLA class II expression). (735 aa)    
Predicted Functional Partners:
W5MLL2_LEPOC
Forkhead box J1b.
    
 
 0.842
foxj1
Forkhead box J1a.
    
 
 0.842
atr
ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.
    
 
 0.815
W5MJX8_LEPOC
BTAF1 RNA polymerase II, B-TFIID transcription factor-associated.
    
   0.794
MCIDAS
Multiciliate differentiation and DNA synthesis associated cell cycle protein.
      
 0.708
dmtf1
Cyclin D binding myb-like transcription factor 1.
    
   0.678
FOXJ3
Forkhead box J3.
    
 
 0.669
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
    
 
 0.663
myb
V-myb avian myeloblastosis viral oncogene homolog.
    
 
 0.645
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
    
 
 0.638
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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