Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fkbp6Peptidylprolyl isomerase. (332 aa)    
Predicted Functional Partners:
cdk5rap3
CDK5 regulatory subunit associated protein 3.
    
   0.974
asz1
Ankyrin repeat, SAM and basic leucine zipper domain containing 1.
   
 0.829
CFP
Complement factor properdin.
    
  0.828
eef2k
Eukaryotic elongation factor 2 kinase.
    
   0.794
W5MV27_LEPOC
Tudor domain containing 9.
  
 0.792
tdrkh
Tudor and KH domain containing.
     
 0.785
W5N674_LEPOC
Uncharacterized protein.
    
   0.784
W5M0P2_LEPOC
Tudor domain containing 12.
    
 0.769
tdrd1
Tudor domain containing 1.
   
 
 0.762
W5NBR9_LEPOC
CXXC finger protein 1a.
     
 0.752
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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