STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5LY64_LEPOCTetratricopeptide repeat domain 9C. (230 aa)    
Predicted Functional Partners:
leo1
Uncharacterized protein.
    
 0.934
ak9
Adenylate kinase 9.
   
 0.881
bbs9
Bardet-Biedl syndrome 9.
    
 0.764
W5MWM9_LEPOC
Tetratricopeptide repeat domain 8.
    
 0.736
anapc16
Anaphase promoting complex subunit 16.
    
 0.731
nudt12
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
   
  0.730
W5NCX0_LEPOC
Tetratricopeptide repeat domain 41.
    
 0.723
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
    
 0.715
anapc4
Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.
    
 0.710
cdc73
Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).
    
 0.709
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.