Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nlgn1Neuroligin 1. (864 aa)    
Predicted Functional Partners:
W5MQX3_LEPOC
Neurexin 3a.
    
 0.987
nrxn1
Neurexin 1b.
    
 0.987
W5M3E5_LEPOC
LAM_G_DOMAIN domain-containing protein.
    
 0.857
W5M3C2_LEPOC
Uncharacterized protein.
    
 0.816
W5N899_LEPOC
Discs, large homolog 4a (Drosophila).
    
 0.784
utp4
UTP4 small subunit processome component.
    
 0.694
lrrtm1
Leucine rich repeat transmembrane neuronal 1.
   
 
 0.694
wdr75
WD repeat domain 75.
   
  0.672
dlg1
Discs, large homolog 1 (Drosophila); Belongs to the MAGUK family.
    
 0.652
W5MDW0_LEPOC
Discs, large homolog 2 (Drosophila); Belongs to the MAGUK family.
    
 0.652
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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