Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc183Uncharacterized protein. (443 aa)    
Predicted Functional Partners:
CNNM1
Cyclin and CBS domain divalent metal cation transport mediator 1.
      
 0.751
spata4
Spermatogenesis associated 4.
      
 0.727
RWDD2A
RWD domain containing 2A.
      
 0.679
KCNS2
Potassium voltage-gated channel modifier subfamily S member 2; Belongs to the potassium channel family.
      
 0.678
GPR151
G protein-coupled receptor 151.
      
 0.618
tmem51
Transmembrane protein 51b.
      
 0.608
cfap53
Cilia and flagella associated protein 53.
    
 
 0.548
cfap45
Cilia and flagella associated protein 45.
      
 0.523
W5NA59_LEPOC
Radial spoke head component 4A.
      
 0.523
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
      
 0.521
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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