Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102684809Si:ch211-246m6.4. (179 aa)    
Predicted Functional Partners:
meox1
Mesenchyme homeobox 1.
    
 
 0.544
ldb2
LIM domain binding 2a.
    
 0.523
TCF4
Transcription factor 4.
    
 0.523
W5MFW8_LEPOC
Transcription factor 3a.
    
 0.523
ldb1
LIM domain binding 1a.
    
 0.523
tcf12
Transcription factor 12.
    
 0.523
tnmd
Tenomodulin.
      
 0.517
mkx
Mohawk homeobox a.
    
 
 0.495
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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