Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cdc42Cell division cycle 42. (195 aa)    
Predicted Functional Partners:
pak2
Non-specific serine/threonine protein kinase.
   
 0.999
W5MIR0_LEPOC
Par-6 family cell polarity regulator alpha.
    
 0.999
pak1
Non-specific serine/threonine protein kinase.
   
 0.998
PAK3
Non-specific serine/threonine protein kinase.
   
 0.998
wasl
WASP like actin nucleation promoting factor b.
   
 0.998
W5ME91_LEPOC
IQ motif containing GTPase activating protein 2.
   
 0.995
W5MEU0_LEPOC
Rho GTPase activating protein 1.
    
 0.995
LOC102693786
IQ motif containing GTPase activating protein 3.
   
 0.995
iqgap1
IQ motif containing GTPase activating protein 1.
   
 0.995
baiap2
BAI1-associated protein 2b.
    
 0.994
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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