STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbl2Transducin (beta)-like 2. (440 aa)    
Predicted Functional Partners:
rngtt
Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus.
 
  
  0.845
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast).
   
 0.747
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.732
taf9b
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.732
W5M3F8_LEPOC
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.731
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
   
 0.726
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
    
 0.716
W5MPM7_LEPOC
Cleavage and polyadenylation specific factor 1.
    
 0.716
anapc4
Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.
    
 0.716
taf1
Transcription initiation factor TFIID subunit.
    
 0.715
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.