STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102682207Retinal outer segment membrane protein 1a. (357 aa)    
Predicted Functional Partners:
rnf128
Ring finger protein 128a.
    
 
 0.611
mst1r
Macrophage stimulating 1 receptor b.
    
  0.593
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.593
pnpla8
Patatin-like phospholipase domain containing 8.
      
 0.550
W5M3M3_LEPOC
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
      
 0.444
LOC102682947
Lens intrinsic membrane protein 2.4.
  
 
 
 0.438
PDGFB
Platelet derived growth factor subunit B; Belongs to the PDGF/VEGF growth factor family.
    
  0.416
tmx3
Thioredoxin related transmembrane protein 3a.
   
 
  0.409
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.