Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zmat3Zinc finger, matrin-type 3. (365 aa)    
Predicted Functional Partners:
zbtb1
Zinc finger and BTB domain containing 1.
      
 0.696
kcnt2
Potassium channel, subfamily T, member 2.
   
  
 0.682
dnai1
Dynein, axonemal, intermediate chain 1, paralog 2.
   
    0.618
W5NA59_LEPOC
Radial spoke head component 4A.
   
    0.612
znf644
Zinc finger protein 644a.
      
 0.560
W5NHN6_LEPOC
ASXL transcriptional regulator 2.
      
 0.536
W5MRB8_LEPOC
Uncharacterized protein.
   
  
 0.531
W5MQ85_LEPOC
Nucleolus and neural progenitor protein.
      
 0.525
W5N5D6_LEPOC
Mediator complex subunit 24.
      
 0.524
mitd1
MIT, microtubule interacting and transport, domain containing 1.
   
    0.440
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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