Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
W5LYR3_LEPOCMatrin-type domain-containing protein. (1293 aa)    
Predicted Functional Partners:
W5N4U2_LEPOC
Nipped-B protein.
   
  0.845
sf3b1
Splicing factor 3b, subunit 1.
   
   0.753
SENP6
SUMO specific peptidase 6.
   
   0.750
u2surp
U2 snRNP-associated SURP domain containing.
   
    0.698
LOC102695202
Zgc:163098.
   
    0.698
ZFC3H1
Zinc finger C3H1-type containing.
   
   0.676
W5N7Y2_LEPOC
Bromodomain PHD finger transcription factor.
   
    0.647
phf3
PHD finger protein 3.
   
    0.646
W5MSQ6_LEPOC
AT rich interactive domain 4A (RBP1-like).
   
 0.624
W5NG20_LEPOC
Translocase of outer mitochondrial membrane 20.
   
 0.624
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.