STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DQX1DEAQ box RNA-dependent ATPase 1. (461 aa)    
Predicted Functional Partners:
W5LZV8_LEPOC
UTP3 small subunit processome component.
   
 0.980
coq5
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
   
 0.972
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.949
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.942
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.940
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 
 0.936
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.935
snrpg
Small nuclear ribonucleoprotein G.
   
  0.929
utp14a
UTP14C small subunit processome component.
   
 0.924
bms1
BMS1 ribosome biogenesis factor.
   
 
 0.923
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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