Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
DQX1DEAQ box RNA-dependent ATPase 1. (461 aa)    
Predicted Functional Partners:
W5LZV8_LEPOC
UTP3 small subunit processome component.
   
 0.957
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.956
noc4l
Nucleolar complex associated 4 homolog.
   
 0.950
wdr36
WD repeat domain 36.
   
  0.943
W5M7L2_LEPOC
PWP2 small subunit processome component.
   
 0.942
W5MB94_LEPOC
Fibrillarin.
   
 
 0.940
bysl
Bystin-like.
   
 
 0.940
coq5
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
   
 0.936
utp4
UTP4 small subunit processome component.
   
 0.934
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.931
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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