Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
def8Differentially expressed in FDCP 8 homolog. (459 aa)    
Predicted Functional Partners:
tcf25
Transcription factor 25 (basic helix-loop-helix).
 
    
 0.855
mc5r
Melanocortin 5a receptor.
      
 0.712
W5LY31_LEPOC
SAM domain, SH3 domain and nuclear localisation signals 1b.
   
  
 0.696
W5LYJ4_LEPOC
Methenyltetrahydrofolate synthetase domain containing.
      
 0.693
W5N6C1_LEPOC
ABI family, member 3a.
      
 0.692
pdcd5
Programmed cell death 5.
      
 0.688
W5MBD8_LEPOC
UV radiation resistance associated gene.
    
 
 0.687
znf276
Zinc finger protein 276.
      
 0.684
W5LZ20_LEPOC
Melanocyte-stimulating hormone receptor.
      
 0.679
W5NF98_LEPOC
Ribosome binding protein 1b.
      
 0.679
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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