STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5LYW6_LEPOCSi:ch211-38m6.7. (296 aa)    
Predicted Functional Partners:
kcnma1
Potassium large conductance calcium-activated channel, subfamily M, alpha member 1a.
     
 0.897
KCNMB4
Potassium calcium-activated channel subfamily M regulatory beta subunit 4.
     
0.864
kcnmb2
Potassium large conductance calcium-activated channel, subfamily M, beta member 2.
  
  
 
0.858
LOC102687607
Uncharacterized protein.
     
 0.823
W5M690_LEPOC
Si:dkey-21e5.1.
     
 0.745
kcnn1
Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1a.
     
 0.666
kcnn2
Potassium calcium-activated channel subfamily N member 2.
     
 0.651
kcnn4
Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4.
     
 0.648
LOC102694332
Ion_trans_2 domain-containing protein.
     
 0.585
tbl1xr1
Transducin (beta)-like 1 X-linked receptor 1a.
      
 0.561
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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