Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ttc17Tetratricopeptide repeat domain 17. (1212 aa)    
Predicted Functional Partners:
gphb5
Glycoprotein hormone subunit beta 5.
      
 0.837
api5
Apoptosis inhibitor 5.
 
    
 0.828
W5M8L2_LEPOC
Uncharacterized protein.
      
 0.731
borcs7
BLOC-1 related complex subunit 7.
      
 0.710
W5M6G3_LEPOC
Uncharacterized protein.
      
 0.689
W5M921_LEPOC
Ubiquitin family domain containing 1.
      
 0.683
lyplal1
Lysophospholipase like 1.
      
 0.675
LOC102684673
Si:dkey-76k16.5.
      
 0.653
kif3b
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.637
kif3c
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.637
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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