Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP20Matrix metallopeptidase 20. (496 aa)    
Predicted Functional Partners:
timp2
TIMP metallopeptidase inhibitor 2b.
   
 0.754
mmp15
Matrix metallopeptidase 15b.
   
 0.654
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.632
mmp11
Matrix metallopeptidase 11a.
   
  0.586
W5MJQ0_LEPOC
ZnMc domain-containing protein.
  
 
0.583
LOC102690117
Opticin.
     
  0.579
LOC102683252
Decorin; May affect the rate of fibrils formation.
   
 0.570
W5MIU6_LEPOC
Matrix metallopeptidase 9.
   
 0.564
W5MSV8_LEPOC
Uncharacterized protein.
   
 0.564
mmp19
Matrix metallopeptidase 19.
  
0.552
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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