Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
W5LZ18_LEPOCB-cell translocation gene 4. (163 aa)    
Predicted Functional Partners:
cnot7
CCR4-NOT transcription complex, subunit 7.
    
 0.869
cnot6l
CCR4-NOT transcription complex, subunit 6-like.
    
 0.797
cnot8
CCR4-NOT transcription complex, subunit 8.
    
 0.784
cnot10
CCR4-NOT transcription complex, subunit 10.
    
 0.654
cnot9
CCR4-NOT transcription complex subunit 9.
    
 0.651
cnot1
CCR4-NOT transcription complex, subunit 1.
    
 0.650
W5LV48_LEPOC
CCR4-NOT transcription complex, subunit 3b.
    
 0.637
cnot2
CCR4-NOT transcription complex, subunit 2.
    
 0.635
cnot11
CCR4-NOT transcription complex, subunit 11.
    
 0.634
cnot4
CCR4-NOT transcription complex, subunit 4a.
     
 0.613
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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