Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
W5LZ29_LEPOCUncharacterized protein. (177 aa)    
Predicted Functional Partners:
smc5
Structural maintenance of chromosomes 5.
    
 0.944
nsmce4a
Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
   
 0.943
W5NL09_LEPOC
Si:dkey-119f1.1.
    
 0.942
nsmce1
NSE1 homolog, SMC5-SMC6 complex component.
    
 0.941
NSMCE2
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.
    
 0.939
smc3
Structural maintenance of chromosomes protein.
    
 0.644
paxip1
PAX interacting (with transcription-activation domain) protein 1.
    
 
 0.603
W5N6Z1_LEPOC
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.
    
   0.600
W5NEG4_LEPOC
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.
    
   0.600
W5NCA9_LEPOC
SMC_N domain-containing protein.
   
 0.570
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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