STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbsCystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (565 aa)    
Predicted Functional Partners:
cth
Cystathionase (cystathionine gamma-lyase), like.
 0.998
W5MRM3_LEPOC
Cysteinyl-tRNA synthetase 2, mitochondrial.
  
 0.989
CRYM
Crystallin mu.
  
 
 0.963
phgdh
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 0.949
mthfr
Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
    
 0.948
psat1
Phosphoserine aminotransferase.
  
 
 0.947
psph
Phosphoserine phosphatase.
    
 0.944
W5NJS5_LEPOC
Glutamate-cysteine ligase, catalytic subunit.
   
 0.944
W5NIR8_LEPOC
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.938
LOC102690077
Threonine aldolase 1.
    
 0.935
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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