Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tcf25Transcription factor 25 (basic helix-loop-helix). (683 aa)    
Predicted Functional Partners:
NEMF
Nuclear export mediator factor.
   
 0.999
ltn1
Listerin E3 ubiquitin protein ligase 1.
   
 0.998
ermn
Uncharacterized protein.
   
 0.957
sat1
Spermidine/spermine N1-acetyltransferase 1b.
    
   0.956
rplp2
Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.
    
 0.948
rpl30
Ribosomal protein L30.
    
  0.944
RPL27A
Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
   
  0.936
rpl6
Ribosomal protein L6.
    
 0.934
rpl32
Ribosomal protein L32.
    
  0.933
rpl10
Ribosomal protein L10.
    
  0.933
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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