STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tcf25Transcription factor 25 (basic helix-loop-helix). (683 aa)    
Predicted Functional Partners:
ltn1
Listerin E3 ubiquitin protein ligase 1.
   
 0.918
NEMF
Nuclear export mediator factor.
    
 0.912
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 
 0.650
LOC102686545
Zgc:136908; Belongs to the AAA ATPase family.
   
 
 0.650
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.644
W5MJC8_LEPOC
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
   
  
 0.643
W5MT67_LEPOC
Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1.
   
 
 0.642
sat1
Spermidine/spermine N1-acetyltransferase 1b.
    
   0.626
ermn
Uncharacterized protein.
    
 
 0.613
SPATA5
Spermatogenesis associated 5.
   
 
 0.573
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.