STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDRGK1DDRGK domain containing 1. (266 aa)    
Predicted Functional Partners:
cdk5rap3
CDK5 regulatory subunit associated protein 3.
    
 
 0.967
ufl1
UFM1-specific ligase 1.
    
 
 0.962
ufc1
Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.
    
 
 0.823
W5MPW1_LEPOC
Ubiquitin-fold modifier 1.
    
 
 0.711
znf366
Zinc finger protein 366.
      
 0.674
W5N8Q3_LEPOC
Ufm1-specific peptidase 2.
    
 
 0.641
znf367
Zinc finger protein 367.
      
 0.611
lman1
Lectin, mannose-binding, 1.
    
  0.608
W5LZ82_LEPOC
Leucine zipper, putative tumor suppressor family member 3b.
      
 0.607
srpra
SRP receptor subunit alpha.
    
 
 0.580
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.