Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DDRGK1DDRGK domain containing 1. (266 aa)    
Predicted Functional Partners:
ufc1
Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.
    
 
 0.991
ufl1
UFM1-specific ligase 1.
    
 
 0.991
cdk5rap3
CDK5 regulatory subunit associated protein 3.
   
 
 0.990
W5MPW1_LEPOC
Ubiquitin-fold modifier 1.
    
 
 0.979
srprb
SRP receptor subunit beta.
   
 
 0.918
srpra
SRP receptor subunit alpha.
    
 
 0.889
W5M954_LEPOC
SRP-alpha_N domain-containing protein.
    
 
 0.889
atp6ap1
ATPase H+ transporting accessory protein 1a.
     
 0.842
rpl26l1
Ribosomal protein L26.
    
 
 0.824
sec61g
SEC61 translocon gamma subunit.
    
 
 0.809
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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