Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trim71Tripartite motif containing 71, E3 ubiquitin protein ligase. (819 aa)    
Predicted Functional Partners:
puf60
Poly-U binding splicing factor b.
    
 
 0.782
rnf181
Ring finger protein 181.
      
 0.696
dph6
Diphthamine biosynthesis 6.
    
 
 0.691
pim3
Serine/threonine-protein kinase; Proto-oncogene with serine/threonine kinase activity involved in cell survival and cell proliferation. Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. PIM subfamily.
    
 
 0.690
lin28a
Lin-28 homolog A (C. elegans).
   
 
 0.689
gbe1
Glucan (1,4-alpha-), branching enzyme 1b.
      
 0.681
bicc1
BicC family RNA binding protein 1a.
      
 0.677
LOC102690400
Bicaudal C homolog 2.
      
 0.677
BBOX1
Gamma-butyrobetaine hydroxylase 1.
      
 0.670
cpeb1
Cytoplasmic polyadenylation element binding protein 1b.
    
 
 0.639
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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