Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
W5LZ72_LEPOCZgc:153681. (516 aa)    
Predicted Functional Partners:
W5N908_LEPOC
Aly/REF export factor.
    
 0.998
nxt2
Nuclear transport factor 2-like export factor 2.
    
 0.998
srsf1
Serine and arginine rich splicing factor 1b.
   
 0.994
rae1
Ribonucleic acid export 1.
    
 0.990
srsf3
Serine and arginine rich splicing factor 3a.
    
 0.989
srsf6
Uncharacterized protein.
   
 0.988
W5M9G1_LEPOC
Uncharacterized protein.
   
 0.988
NUP214
Nucleoporin 214.
   
 0.988
srsf5
Serine and arginine rich splicing factor 5b.
   
 0.988
LOC102694417
Serine and arginine rich splicing factor 5a.
   
 0.988
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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