Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mvb12bMultivesicular body subunit 12Bb. (304 aa)    
Predicted Functional Partners:
tsg101
Tumor susceptibility 101a.
    
 0.999
vps28
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
   
 0.999
vps37a
VPS37A subunit of ESCRT-I.
   
 0.998
vps37c
VPS37C subunit of ESCRT-I.
   
 0.996
vps37d
Si:ch211-284f22.3.
   
 0.992
pdcd6ip
Programmed cell death 6 interacting protein.
     
 0.961
LOC102684430
UEV and lactate/malate dehyrogenase domains.
    
 0.950
W5MIP0_LEPOC
Uncharacterized protein.
    
0.949
vps25
Vacuolar protein sorting 25 homolog.
    
 0.949
chmp3
Charged multivesicular body protein 3.
     
 0.943
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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