Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arhgap15Rho GTPase activating protein 15. (470 aa)    
Predicted Functional Partners:
rhof
Ras homolog family member F.
    
 0.822
gtdc1
Glycosyltransferase-like domain containing 1.
      
 0.720
cdc42
Cell division cycle 42.
   
 0.716
cdc42se2
CDC42 small effector 2.
   
  
 0.677
LOC102698253
Cell division cycle 42, like.
   
 0.639
pstpip1
Proline-serine-threonine phosphatase interacting protein 1b.
   
 
 0.607
pstpip2
Proline-serine-threonine phosphatase interacting protein 2.
   
 
 0.599
ppp6c
Serine/threonine-protein phosphatase.
    
   0.589
W5MEU0_LEPOC
Rho GTPase activating protein 1.
     
 0.578
rac1
Rac family small GTPase 1b.
   
 0.576
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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