Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cntn1Contactin 1b. (1022 aa)    
Predicted Functional Partners:
W5LZ11_LEPOC
Neuronal cell adhesion molecule a.
   
0.970
W5N2A4_LEPOC
Neurofascin homolog (chicken) a.
   
0.970
cntnap1
Contactin associated protein 1.
   
 0.942
ptprg
Protein tyrosine phosphatase receptor type Ga.
    
 
 0.789
chl1
Cell adhesion molecule L1-like b.
   
 0.721
W5NCC6_LEPOC
L1 cell adhesion molecule, paralog a.
   
 0.721
W5MXT3_LEPOC
Amyloid beta (A4) precursor protein b.
   
   0.712
gypc
Glycophorin C (Gerbich blood group).
   
 0.676
LOC102688699
Contactin associated protein like 3.
   
 0.676
W5MWK1_LEPOC
Contactin associated protein-like 5b.
   
 0.676
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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