Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102684307Cd8 beta. (212 aa)    
Predicted Functional Partners:
W5LXF4_LEPOC
Ig-like domain-containing protein.
     
  0.900
W5MQ86_LEPOC
Ig-like domain-containing protein; Belongs to the MHC class I family.
     
  0.900
LOC102685166
Uncharacterized protein.
      
 0.684
W5M3K6_LEPOC
Tyrosine-protein kinase.
   
  
 0.564
RMND5A
Required for meiotic nuclear division 5 homolog A.
      
 0.559
sp2
Sp2 transcription factor.
      
 0.525
ikzf1
IKAROS family zinc finger 1 (Ikaros).
      
 0.519
LOC102695421
Tyrosine-protein kinase.
      
 0.493
cd74
CD74 molecule, major histocompatibility complex, class II invariant chain a.
      
 0.487
rag2
Recombination activating gene 2.
      
 0.477
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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