Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ppm1eProtein phosphatase, Mg2+/Mn2+ dependent, 1E. (615 aa)    
Predicted Functional Partners:
W5MTQ7_LEPOC
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.813
W5N0B4_LEPOC
Uncharacterized protein; Belongs to the NDK family.
   
 
 0.813
fem1c
Fem-1 homolog c (C. elegans).
    
 
 0.770
fem1b
Fem-1 homolog b (C. elegans).
    
 
 0.770
FEM1A
Fem-1 homolog A.
    
 
 0.770
W5M6P3_LEPOC
WD repeat domain 90.
    
   0.724
rnf170
Ring finger protein 170.
      
 0.675
W5MIZ7_LEPOC
Uncharacterized protein.
      
 0.675
slc25a27
Solute carrier family 25 member 27; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.675
camk4
Calcium/calmodulin-dependent protein kinase IV; Belongs to the protein kinase superfamily.
    
 0.673
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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