STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpt1tRNA phosphotransferase 1. (245 aa)    
Predicted Functional Partners:
nudt22
Nudix (nucleoside diphosphate linked moiety X)-type motif 22.
 
 
  
 0.888
thyn1
Thymocyte nuclear protein 1.
      
 0.799
rtcb
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
     
 0.760
LOC102696686
Vitamin K epoxide reductase complex, subunit 1.
   
  
 0.722
xpot
Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.
   
  
 0.720
LOC102686612
ArfGAP with SH3 domain, ankyrin repeat and PH domain 3.
   
  
 0.704
mrpl18
Mitochondrial ribosomal protein L18.
      
 0.699
rassf9
Ras association domain family member 9.
      
 0.685
cnksr1
Connector enhancer of kinase suppressor of Ras 1.
      
 0.684
W5N457_LEPOC
RUN and FYVE domain containing 1.
      
 0.682
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.