Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
W5LZI8_LEPOCFermitin family member 3b. (352 aa)    
Predicted Functional Partners:
W5MTJ8_LEPOC
Integrin-linked kinase.
   
 
 0.892
W5MMG4_LEPOC
Filamin binding LIM protein 1.
    
 0.846
fermt2
Fermitin family member 2.
    
   0.840
fermt1
Fermitin family member 1.
    
   0.840
W5MHE7_LEPOC
Exosome component 10.
    
   0.816
lsm8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
   0.791
NCKAP1L
NCK associated protein 1 like.
   
 
 0.773
nckap1
NCK-associated protein 1.
   
 
 0.773
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.762
itgb8
Integrin beta; Belongs to the integrin beta chain family.
   
 0.759
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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