Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmem184aTransmembrane protein 184a. (418 aa)    
Predicted Functional Partners:
laptm4b
Lysosomal protein transmembrane 4 beta.
   
 
 0.735
GABARAPL2
GABA(A) receptor-associated protein like 2.
    
   0.718
gabarap
GABA(A) receptor-associated protein a.
    
   0.718
tmem115
Transmembrane protein 115.
      
 0.702
W5MHA4_LEPOC
Potassium channel tetramerization domain containing 14.
      
 0.677
ubl7
Ubiquitin-like 7a (bone marrow stromal cell-derived).
      
 0.619
W5N688_LEPOC
Kelch domain containing 8B.
      
 0.600
ccdc25
Coiled-coil domain containing 25.
      
 0.525
W5NHC9_LEPOC
Uncharacterized protein.
      
 0.524
tmem214
Transmembrane protein 214.
      
 0.515
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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