Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ift52Intraflagellar transport 52 homolog (Chlamydomonas). (436 aa)    
Predicted Functional Partners:
ift74
Intraflagellar transport 74.
    
 0.999
cluap1
Clusterin associated protein 1.
   
 0.999
ift80
Uncharacterized protein.
   
 0.999
ift46
Intraflagellar transport 46 homolog (Chlamydomonas).
    
 0.999
LOC102687908
Fleer.
    
 0.999
ift81
Intraflagellar transport 81 homolog.
   
 0.999
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 0.999
W5MY78_LEPOC
Intraflagellar transport 88 homolog.
  
 0.999
hspb11
Zgc:158640.
    
 0.999
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
   
 0.999
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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