Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nfycNuclear transcription factor Y, gamma. (342 aa)    
Predicted Functional Partners:
nfya
Nuclear transcription factor Y, alpha.
    
 0.999
nfyb
Nuclear transcription factor Y, beta a.
   
 0.999
pole3
Polymerase (DNA directed), epsilon 3 (p17 subunit).
    
 0.961
pon2
Paraoxonase 1.
    
   0.898
W5NAP2_LEPOC
SUMO1 activating enzyme subunit 1.
   
   0.797
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 
 0.759
plekhf2
Pleckstrin homology domain containing, family F (with FYVE domain) member 2.
    
   0.729
gtf2e2
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
      
 0.673
SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 
 0.663
smarca1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1.
   
 
 0.663
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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